PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G31860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19423.3 Da    PI: 7.4652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G31860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.7e-24959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien + rq +fskRr g+lKKA EL vLCda+v viifs +gkl++++s
  OB06G31860.1  9 KRIENATSRQGSFSKRRGGLLKKARELAVLCDAQVGVIIFSGRGKLFDFCS 59
                  79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.142161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.17E-36259No hitNo description
SuperFamilySSF554551.7E-25261IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGKVELKR IENATSRQGS FSKRRGGLLK KARELAVLCD AQVGVIIFSG RGKLFDFCSL  60
PLRIDITCTR PCSLTLFLRG NHANALVYRP QRMLMDSPNQ ISEEWHQSPA ASGEASAVEA  120
LTMLPAATEA KAEAFGHSCF LPEEEEGPAL QLWPQPPELH HVDVKGFDQP ELRLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925485e-56FP092548.1 Phyllostachys edulis cDNA clone: bphyem202o20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6H7112e-28MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLJ3MGP21e-128J3MGP2_ORYBR; Uncharacterized protein
STRINGOB06G31860.11e-127(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.29e-28AGAMOUS-like 16